PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK33622.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family TCP
Protein Properties Length: 283aa    MW: 30236.2 Da    PI: 7.5357
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK33622.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP124.41.2e-3858139383
         TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas 83 
                 +k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tg+++++as+  +a+ s+s+++
  KFK33622.1  58 PKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGSGTIPASALaSAAGSVSNHQ 139
                 6999****************************************************************88864444444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.9E-3262243IPR005333Transcription factor, TCP
PROSITE profilePS5136928.01663117IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MDPKNPNRHQ VPNFLNPPPP QQQQQPRNQT IEDASDNHKS TEIKIVSDKK QQNQNLGPKR  60
SSNKDRHTKV EGRGRRIRMP ALCAARIFQL TRELGHKSDG ETIQWLLQQA EPSIIAATGS  120
GTIPASALAS AAGSVSNHQG GSLTTGLMIS HDLDGGGGGS SSRSNLPNGL WPNVAGFGAG  180
VQMSEGGAGY RIGFPGFDFG PMSFASILGA SGGNNNQMPG LELGLSQEGL NPQSFTQIYQ  240
QMGQAEGQGR VLHHTLHQHH HNQSHGDHEQ ESGEKDDSQG SGR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00005PBMTransfer from 484486Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0266493e-89AB026649.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MOJ10.
GenBankAJ2917493e-89AJ291749.1 Arabidopsis thaliana mRNA for putative transcription factor (PCF1 gene).
GenBankAK1181783e-89AK118178.1 Arabidopsis thaliana At3g27010 mRNA for unknown protein, complete cds, clone: RAFL19-49-P20.
GenBankBT0060433e-89BT006043.1 Arabidopsis thaliana clone U50934 unknown protein (At3g27010) mRNA, complete cds.
GenBankCP0026863e-89CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013644693.11e-125PREDICTED: transcription factor TCP20-like
RefseqXP_013644692.11e-125PREDICTED: transcription factor TCP20-like
SwissprotQ9LSD51e-114TCP20_ARATH; Transcription factor TCP20
TrEMBLA0A087GUS00.0A0A087GUS0_ARAAL; Uncharacterized protein
STRINGBra025244.1-P1e-123(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40502759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27010.11e-109TCP family protein