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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK33622.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | TCP | ||||||||
Protein Properties | Length: 283aa MW: 30236.2 Da PI: 7.5357 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 124.4 | 1.2e-38 | 58 | 139 | 3 | 83 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas 83 +k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tg+++++as+ +a+ s+s+++ KFK33622.1 58 PKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGSGTIPASALaSAAGSVSNHQ 139 6999****************************************************************88864444444444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.9E-32 | 62 | 243 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.016 | 63 | 117 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008361 | Biological Process | regulation of cell size | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MDPKNPNRHQ VPNFLNPPPP QQQQQPRNQT IEDASDNHKS TEIKIVSDKK QQNQNLGPKR 60 SSNKDRHTKV EGRGRRIRMP ALCAARIFQL TRELGHKSDG ETIQWLLQQA EPSIIAATGS 120 GTIPASALAS AAGSVSNHQG GSLTTGLMIS HDLDGGGGGS SSRSNLPNGL WPNVAGFGAG 180 VQMSEGGAGY RIGFPGFDFG PMSFASILGA SGGNNNQMPG LELGLSQEGL NPQSFTQIYQ 240 QMGQAEGQGR VLHHTLHQHH HNQSHGDHEQ ESGEKDDSQG SGR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00005 | PBM | Transfer from 484486 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB026649 | 3e-89 | AB026649.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MOJ10. | |||
GenBank | AJ291749 | 3e-89 | AJ291749.1 Arabidopsis thaliana mRNA for putative transcription factor (PCF1 gene). | |||
GenBank | AK118178 | 3e-89 | AK118178.1 Arabidopsis thaliana At3g27010 mRNA for unknown protein, complete cds, clone: RAFL19-49-P20. | |||
GenBank | BT006043 | 3e-89 | BT006043.1 Arabidopsis thaliana clone U50934 unknown protein (At3g27010) mRNA, complete cds. | |||
GenBank | CP002686 | 3e-89 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013644693.1 | 1e-125 | PREDICTED: transcription factor TCP20-like | ||||
Refseq | XP_013644692.1 | 1e-125 | PREDICTED: transcription factor TCP20-like | ||||
Swissprot | Q9LSD5 | 1e-114 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | A0A087GUS0 | 0.0 | A0A087GUS0_ARAAL; Uncharacterized protein | ||||
STRING | Bra025244.1-P | 1e-123 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4050 | 27 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 1e-109 | TCP family protein |